Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs59179879 chr17:62976591 C/G 8.78E-9 490 30.8 31.33 19.63 KM Plot
PRAD rs59264610 chr11:6942588 TC/T 5.94E-8 491 30.97 28.48 28.57 KM Plot
PRAD rs59288313 chr11:24214286 ACT/A 5.66E-9 493 30.8 37.47 22.92 KM Plot
PRAD rs59317408 chr1:1158534 G/GAC 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs59369617 chr11:6934068 T/A 5.69E-8 492 30.93 29.32 28.57 KM Plot
PRAD rs59391238 chr9:138773187 A/G 0.000179 485 31.37 31.23 17.15 KM Plot
PRAD rs59403188 chr17:62976657 A/G 8.78E-9 490 30.8 31.33 19.63 KM Plot
PRAD rs59490819 chr17:62976404 C/G 8.78E-9 489 30.8 31.37 19.63 KM Plot
PRAD rs59504280 chr13:24959110 T/G 0.000127 487 29.18 32.7 27.03 KM Plot
PRAD rs59522915 chr17:37812435 G/T 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs59546243 chr9:72836163 C/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs59571285 chr15:68611951 A/G 0.00013 478 31.25 31.62 22.95 KM Plot
PRAD rs59634587 chr5:154355927 CAG/C 0 488 30.27 33.07 5.58 KM Plot
PRAD rs59640658 chr16:5006541 T/C 0.000148 484 31.27 29.95 26.37 KM Plot
PRAD rs59647069 chr17:62977919 A/AAC 1.76E-8 474 30.75 31.37 19.63 KM Plot